Basic Information
Locus ID:
gene_15922
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 39439557 | 39448776 | + | gene_15922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 56,974.75 Da | 53.64 | 81.21 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 327 | 503 | 3.09434E-113 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 107 | 2.4E-12 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 325 | 432 | 2.3E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 329 | 458 | 4.18E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 129 | 3.7E-34 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 314 | 503 | 8.5E-71 | - |
| SMART | SM00232 | pad1_6 | 328 | 456 | 1.8E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 329 | 459 | 30.296549 | IPR037518 |
| Coils | Coil | Coil | 94 | 121 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ELE0 | MPN domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology