Basic Information
Locus ID:
gene_15910
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 38896960 | 38902066 | + | gene_15910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 46,311.43 Da | 53.88 | 67.35 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 263 | 347 | 1.9E-16 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 364 | 395 | 1.0E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 263 | 348 | 2.2E-24 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 36 | - | - |
| Coils | Coil | Coil | 255 | 322 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_021730233.1 | uncharacterized protein LOC110697193 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QS75 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_153810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology