Basic Information
Locus ID:
gene_15901
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 53827869 | 53863582 | + | gene_15901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 41,640.00 Da | 51.51 | 82.18 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.45522E-30 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 149 | 198 | 3.12466E-30 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 338 | 380 | 6.84958E-24 | - |
| Pfam | PF09280 | XPC-binding domain | 261 | 316 | 6.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 155 | 193 | 3.1E-15 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 341 | 377 | 7.7E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.5E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 203 | 2.43E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 5.3E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 321 | 384 | 1.05E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 259 | 324 | 5.76E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 251 | 316 | 1.9E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 333 | 382 | 3.2E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.0E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 198 | 8.3E-22 | - |
| SMART | SM00165 | uba_6 | 155 | 195 | 8.2E-6 | IPR015940 |
| SMART | SM00727 | CBM | 259 | 302 | 9.9E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.0E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 342 | 379 | 1.7E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 385 | 3.9E-127 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 153 | 196 | 12.932447 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 340 | 380 | 15.727711 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.584513 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 367 | 3.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 383 | 3.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 336 | 352 | 3.5E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 287 | 309 | 3.5E-32 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C8Z7R0 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology