Basic Information
Locus ID:
gene_15885
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 38239317 | 38257201 | + | gene_15885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 146,115.41 Da | 47.96 | 82.25 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 589 | 703 | 2.73143E-24 | - |
| Pfam | PF04043 | Plant invertase/pectin methylesterase inhibitor | 1157 | 1272 | 6.0E-8 | IPR006501 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 2 | 88 | 1.8E-20 | IPR025558 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 623 | 691 | 1.2E-5 | IPR002934 |
| Pfam | PF14392 | Zinc knuckle | 91 | 132 | 6.6E-6 | IPR025836 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 563 | 886 | 1.8E-57 | IPR007012 |
| SUPERFAMILY | SSF101148 | Plant invertase/pectin methylesterase inhibitor | 1155 | 1285 | 5.75E-16 | IPR035513 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 889 | 1001 | 3.92E-17 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 548 | 741 | 3.31E-41 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 745 | 886 | 3.92E-45 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 889 | 993 | 2.3E-10 | - |
| Gene3D | G3DSA:1.20.140.40 | Invertase/pectin methylesterase inhibitor family protein | 1152 | 1294 | 3.2E-16 | IPR035513 |
| Gene3D | G3DSA:1.10.1410.10 | - | 563 | 884 | 6.8E-104 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 582 | 738 | 6.8E-104 | IPR043519 |
| TIGRFAM | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | 1132 | 1271 | 4.1E-14 | IPR006501 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 118 | 132 | 9.801064 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 429 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06560.1 | poly(A) polymerase 3. Encodes a poly(A) polymerase. Located in the cytoplasm. | 0 |
| RefSeq | XP_010671779.2 | nuclear poly(A) polymerase 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q56XM9 | Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=PAPS3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S1A8 | Poly(A) polymerase OS=Spinacia oleracea OX=3562 GN=SOVF_003570 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology