Basic Information
Locus ID:
gene_15860
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
CPK24
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 37869447 | 37873290 | + | gene_15860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 61,275.36 Da | 44.55 | 81.21 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 65 | 323 | 9.32372E-137 | - |
| Pfam | PF00069 | Protein kinase domain | 66 | 324 | 8.7E-78 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 370 | 430 | 9.4E-9 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 443 | 506 | 6.0E-10 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 49 | 348 | 2.43E-88 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 364 | 505 | 9.94E-39 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 68 | 151 | 1.4E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 332 | 6.7E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 333 | 508 | 1.7E-48 | - |
| SMART | SM00054 | efh_1 | 443 | 471 | 0.0023 | IPR002048 |
| SMART | SM00054 | efh_1 | 480 | 508 | 1.9E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 66 | 324 | 2.7E-101 | IPR000719 |
| SMART | SM00054 | efh_1 | 371 | 399 | 4.9E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 407 | 435 | 0.52 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 66 | 324 | 50.124123 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 439 | 474 | 11.640179 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 367 | 402 | 14.820255 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 476 | 511 | 12.700205 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 403 | 438 | 9.408546 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 380 | 392 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 186 | 198 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 452 | 464 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 416 | 428 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 489 | 501 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 72 | 95 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_010671825.1 | calcium-dependent protein kinase 24 [Beta vulgaris subsp. vulgaris] | 0 |
| Q42438 | Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CPK8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KTC5 | Calcium-dependent protein kinase 24 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology