Basic Information
Locus ID:
gene_15850
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 45473542 | 45477612 | + | gene_15850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 51,096.28 Da | 34.80 | 68.65 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 33 | 51 | 0.0042 | - |
| Pfam | PF14608 | RNA-binding, Nab2-type zinc finger | 143 | 162 | 0.0071 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 173 | 208 | 5.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 368 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 329 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 139 | 163 | 7.85E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 171 | 458 | 1.14E-41 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 29 | 163 | 5.6E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 291 | 465 | 2.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 164 | 290 | 1.0E-11 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.0023 | IPR000571 |
| SMART | SM00320 | WD40_4 | 332 | 369 | 4.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 208 | 5.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 53.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 139 | 164 | 0.012 | IPR000571 |
| SMART | SM00320 | WD40_4 | 419 | 456 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 329 | 5.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 416 | 110.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 217 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 138 | 165 | 12.905883 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 176 | 208 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 299 | 338 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 11.450572 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 299 | 331 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 378 | 10.408196 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 316 | 330 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 195 | 209 | 5.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 316 | 330 | 5.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 356 | 370 | 5.5E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 104 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021765944.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A438EUW8 | Zinc finger CCCH domain-containing protein 48 OS=Vitis vinifera OX=29760 GN=ZFWD1_20 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology