Basic Information
Locus ID:
gene_15785
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 36269551 | 36290668 | + | gene_15785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 38,179.86 Da | 34.44 | 83.84 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 58 | 260 | 1.2E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 37 | 259 | 4.45E-66 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 36 | 128 | 4.0E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 131 | 314 | 8.2E-43 | - |
| SMART | SM00220 | serkin_6 | 54 | 281 | 1.2E-18 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 54 | 344 | 32.612099 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 60 | 82 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 176 | 188 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16670.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_049933509.1 | putative serine/threonine-protein kinase isoform X2 [Nymphaea colorata] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2R6X3I3 | Protein kinase domain-containing protein OS=Marchantia polymorpha OX=3197 GN=MARPO_0038s0015 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_15779, gene_15780, gene_15781, gene_15782, gene_15783 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g058420 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006392, GOSA_00006398 |