Basic Information
Locus ID:
gene_15775
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 22468963 | 22476712 | + | gene_15775 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 49,875.28 Da | 34.85 | 71.47 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 316 | 0.092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 159 | 195 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 356 | 1.2E-4 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 127 | 150 | 3.27E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 447 | 2.44E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 149 | 244 | 1.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 249 | 450 | 7.0E-30 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 27 | 148 | 8.9E-6 | - |
| SMART | SM00320 | WD40_4 | 319 | 356 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 443 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 316 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 272 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 403 | 26.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 126 | 151 | 0.013 | IPR000571 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 3.5E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 52 | 0.023 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 204 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 325 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 126 | 152 | 10.971728 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 32 | 53 | 11.384849 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 286 | 319 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 195 | 10.601049 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 343 | 357 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 1.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 1.4E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021765944.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A151U0R5 | Zinc finger CCCH domain-containing protein 48 OS=Cajanus cajan OX=3821 GN=KK1_005491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology