Basic Information
Locus ID:
gene_15719
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 34444747 | 34447870 | + | gene_15719 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 50,007.55 Da | 55.36 | 72.47 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 158 | 209 | 5.3E-7 | - |
| Pfam | PF01344 | Kelch motif | 226 | 258 | 8.5E-10 | IPR006652 |
| Pfam | PF00646 | F-box domain | 50 | 89 | 1.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 46 | 91 | 3.01E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 134 | 396 | 6.02E-37 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 122 | 414 | 4.2E-35 | IPR015915 |
| SMART | SM00612 | kelc_smart | 171 | 219 | 1.9E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 225 | 272 | 3.2E-9 | IPR006652 |
| SMART | SM00256 | fbox_2 | 52 | 92 | 3.0E-6 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021855600.1 | F-box/kelch-repeat protein SKIP20 isoform X1 [Spinacia oleracea] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QG85 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_189150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology