Basic Information
Locus ID:
gene_15708
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
cell division
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 34182716 | 34205117 | + | gene_15708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 120,899.91 Da | 45.72 | 83.87 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 907 | 970 | 1.10921E-19 | - |
| CDD | cd01803 | Ubl_ubiquitin | 829 | 904 | 2.87875E-44 | - |
| CDD | cd01803 | Ubl_ubiquitin | 957 | 1023 | 5.77923E-43 | - |
| Pfam | PF00240 | Ubiquitin family | 734 | 780 | 1.7E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 956 | 1021 | 5.3E-29 | IPR000626 |
| Pfam | PF14560 | Ubiquitin-like domain | 918 | 950 | 0.088 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 801 | 826 | 9.3E-6 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 831 | 901 | 8.0E-29 | IPR000626 |
| Pfam | PF00400 | WD domain, G-beta repeat | 28 | 61 | 0.13 | IPR001680 |
| Pfam | PF00240 | Ubiquitin family | 1026 | 1085 | 1.3E-23 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 903 | 960 | 9.67E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 956 | 1023 | 6.71E-28 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 732 | 787 | 7.83E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1023 | 1085 | 2.33E-24 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 784 | 828 | 3.22E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 828 | 904 | 1.2E-29 | IPR029071 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 313 | 1.36E-43 | IPR036322 |
| Gene3D | G3DSA:3.10.20.90 | - | 1025 | 1088 | 2.9E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 829 | 904 | 7.8E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 718 | 787 | 6.9E-21 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 325 | 6.9E-24 | IPR015943 |
| Gene3D | G3DSA:3.10.20.90 | - | 956 | 1024 | 6.1E-39 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 172 | 4.2E-20 | IPR015943 |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 828 | 1.8E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 905 | 955 | 3.2E-31 | - |
| SMART | SM00213 | ubq_7 | 710 | 781 | 5.6E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 905 | 956 | 4.3E-13 | IPR000626 |
| SMART | SM00320 | WD40_4 | 157 | 198 | 0.46 | IPR001680 |
| SMART | SM00213 | ubq_7 | 786 | 824 | 6.4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 829 | 900 | 3.6E-30 | IPR000626 |
| SMART | SM00320 | WD40_4 | 245 | 283 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 62 | 0.0048 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 1.3 | IPR001680 |
| SMART | SM00213 | ubq_7 | 1024 | 1099 | 3.5E-22 | IPR000626 |
| SMART | SM00213 | ubq_7 | 957 | 1019 | 7.3E-25 | IPR000626 |
| SMART | SM00320 | WD40_4 | 64 | 112 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 242 | 0.078 | IPR001680 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 905 | 951 | 18.040127 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 704 | 785 | 17.800598 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 952 | 1023 | 26.880939 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1024 | 1085 | 23.375101 | IPR000626 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 30 | 61 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 829 | 904 | 28.405218 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 802 | 828 | 10.78892 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 974 | 999 | - | IPR019954 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 1050 | 1075 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 979 | 999 | 2.3E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 1000 | 1021 | 2.3E-36 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 958 | 978 | 2.3E-36 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 369 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05970.1 | Transducin/WD40 repeat-like superfamily protein. a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis | 0 |
| RefSeq | XP_010695325.1 | protein NEDD1 [Beta vulgaris subsp. vulgaris] | 0 |
| B3H5K9 | Protein NEDD1 OS=Arabidopsis thaliana OX=3702 GN=NEDD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B9W9 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34197 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1084, gene_15708 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020012 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38169, Sbi_jg6290 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15560 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003620 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01571, Sgl06742 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029735, gene:ENSEOMG00000043344 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013020, CQ.Regalona.r1.3BG0013070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175980 |
| Apiaceae | Apium graveolens | 1 | Ag10G01202 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G001260, COCNU_12G008120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697585, gene-LOC103704120 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3608.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33422 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05970.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012734m.g.v1.0, Thhalv10020101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g09610.v2.2, Sp6g36920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g053750.2N, BniB02g054740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1169 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00990 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0075s00018.v1.0, Dusal.0178s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate03g13590, gene.Thate03g20800, gene.Thate04g17670 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1976, nbisL1-mrna-3967 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1788 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038786 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05339 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1384, BH03.1506 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521880, gene-QOZ80_6BG0476940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0470640.1 |
| Poaceae | Oryza coarctata | 2 | Oco17G001370, Oco18G001290 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g09470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G150100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702789, Pt_Chr0702792 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G003340, Chr11G015950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G300000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG028140, gene_TRIDC5BG029600 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G171300.1, TraesCS5B02G168800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb095480_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28722 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29719 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1642, evm.TU.LG11.995 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.359, evm.TU.Scaffold_4_RagTag.1767 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14057, nbisL1-mrna-25971 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4, nbisL1-mrna-986 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14211, nbisL1-mrna-4568 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.136, evm.TU.utg000008l.989 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000753, Maker00010047 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2063, nbisL1-mrna-468 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24376, nbisL1-mrna-9417 |
| Salicaceae | Populus euphratica | 2 | populus_peu06479, populus_peu20347 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637738 |
| Solanaceae | Solanum chilense | 1 | SOLCI001325000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3640 |
| Zosteraceae | Zostera marina | 2 | Zosma01g15990.v3.1, Zosma04g15340.v3.1 |