Basic Information
Locus ID:
gene_15701
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
MADS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 33945621 | 33951547 | + | gene_15701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 39,781.16 Da | 52.91 | 74.73 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00266 | MADS_SRF_like | 2 | 86 | 2.10768E-25 | IPR033897 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 52 | 9.5E-16 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 95 | 6.93E-22 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 97 | 3.8E-17 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 3.9E-22 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 49 | 17.675112 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.0E-8 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.0E-8 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 325 | - | - |
| Coils | Coil | Coil | 88 | 115 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26630.1 | MADS-box transcription factor family protein. | 0 |
| RefSeq | XP_010675118.1 | agamous-like MADS-box protein AGL80 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FJK3 | Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8Z1W2 | MADS-box domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_12609, gene_12987, gene_12988, gene_12990, gene_15701 ... |