Basic Information
Locus ID:
gene_15682
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 33243256 | 33246809 | + | gene_15682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 50,793.76 Da | 44.75 | 77.20 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 111 | 426 | 8.5E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 70 | 458 | 6.83E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 67 | 457 | 2.4E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 289 | 309 | 3500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 266 | 287 | 10000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 319 | 340 | 10.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 239 | 265 | 630.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 348 | 369 | 170.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 296 | 309 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021752444.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXC5 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_137910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology