Basic Information
Locus ID:
gene_15660
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 32708023 | 32719509 | + | gene_15660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 134,470.77 Da | 63.84 | 54.73 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 41 | 70 | 5.69151E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 758 | 887 | 1.70681E-62 | - |
| Pfam | PF00397 | WW domain | 40 | 70 | 4.9E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 770 | 878 | 4.0E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 563 | 733 | 3.7E-48 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 32 | 71 | 3.42E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 610 | 894 | 8.16E-76 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 34 | 73 | 6.4E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 489 | 747 | 1.3E-85 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 748 | 919 | 6.7E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 558 | 761 | 7.9E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 798 | 878 | 3.4E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 39 | 72 | 2.7E-8 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 38 | 72 | 11.7627 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 773 | 917 | 26.004822 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 570 | 744 | 30.892834 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 690 | 698 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 44 | 70 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 990 | 1183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 936 | 959 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1036 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1195 | 1227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 149 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_010672591.1 | DEAD-box ATP-dependent RNA helicase 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW7 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology