Basic Information
Locus ID:
gene_15646
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 32001080 | 32004935 | + | gene_15646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 31,403.33 Da | 48.49 | 65.80 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 99 | 271 | 1.58771E-71 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 28 | 65 | 9.42959E-18 | - |
| Pfam | PF00187 | Chitin recognition protein | 28 | 65 | 5.5E-15 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 163 | 271 | 2.9E-56 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 28 | 68 | 2.62E-14 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 95 | 278 | 1.07E-73 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 79 | 284 | 7.8E-87 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 26 | 67 | 1.9E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 28 | 65 | 7.0E-19 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 165 | 1.7E-44 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 162 | 278 | 8.8E-46 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 26 | 67 | 10.841081 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 183 | 193 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 38 | 57 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 116 | 138 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 51 | 58 | 7.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 44 | 51 | 7.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 36 | 44 | 7.4E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_027904895.1 | endochitinase [Vigna unguiculata] | 0 |
| Q8GUD7 | Probable inactive chitinase-like protein LaCIC (Fragment) OS=Hevea brasiliensis OX=3981 GN=LACIC PE=1 SV=1 | 0 | |
| TrEMBL | A0A6V7NSF1 | chitinase OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS4447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology