Basic Information
Locus ID:
gene_15645
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 31966807 | 31970740 | + | gene_15645 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 32,100.85 Da | 42.02 | 61.22 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 87 | 280 | 2.85826E-93 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 23 | 61 | 7.9658E-17 | - |
| Pfam | PF00182 | Chitinase class I | 151 | 280 | 6.6E-65 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 24 | 61 | 3.1E-12 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 24 | 72 | 2.62E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 83 | 286 | 2.62E-86 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 189 | 286 | 1.0E-67 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 22 | 63 | 1.2E-14 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 86 | 151 | 4.2E-24 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 152 | 188 | 1.0E-67 | - |
| SMART | SM00270 | ChitinBD_3 | 24 | 61 | 4.5E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 152 | 4.2E-43 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 150 | 287 | 3.8E-58 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 22 | 63 | 10.189696 | IPR001002 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 192 | 202 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 104 | 126 | - | IPR000726 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021610905.1 | probable inactive chitinase-like protein LaCIC [Manihot esculenta] | 0 |
| Q688M5 | Chitinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W029 | Chitin-binding type-1 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_04G065800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology