HalophFGD

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Basic Information
Locus ID: gene_15533
Species & Taxonomic ID: Reaumuria soongarica & 194564
Genome Assembly: GCA_040143545.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr06 77767610 77778440 - gene_15533
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.22 63,386.79 Da 34.01 79.33 -0.32
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13812 Pentatricopeptide repeat domain 464 517 0.0062 IPR002885
Pfam PF01535 PPR repeat 205 228 0.014 IPR002885
Pfam PF13041 PPR repeat family 405 454 2.3E-10 IPR002885
Pfam PF13041 PPR repeat family 335 379 7.0E-10 IPR002885
Pfam PF13041 PPR repeat family 265 311 2.3E-12 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 102 259 1.6E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 260 327 3.1E-17 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 328 423 1.2E-24 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 424 547 1.8E-20 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 479 510 0.0017 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 268 302 5.5E-10 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 303 336 0.0019 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 338 372 2.2E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 409 442 2.2E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 205 232 2.2E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 375 406 0.001 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 164 190 5.2E-4 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 371 405 10.205028 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 476 510 10.654441 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 336 370 11.805378 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 301 335 9.196589 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 197 231 9.152743 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 406 440 9.54735 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 266 300 13.350921 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G22670.1 Pentatricopeptide repeat (PPR) superfamily protein. 0
RefSeq XP_008224275.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Prunus mume] 0
Swiss-Prot Q9LUJ4 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1 0
TrEMBL A0A438KM41 Pentatricopeptide repeat-containing protein, mitochondrial OS=Vitis vinifera OX=29760 GN=VvCHDp000105_3 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.