Basic Information
Locus ID:
gene_15447
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 72451346 | 72458363 | - | gene_15447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 99,429.54 Da | 40.41 | 83.75 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 277 | 866 | 2.6E-64 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 275 | 869 | 1.9E-85 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 270 | 516 | 3.6E-50 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 692 | 871 | 3.9E-43 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 277 | 869 | 44.20892 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 278 | 293 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 179 | 199 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_010247842.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Nelumbo nucifera] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U7Z3S4 | ubiquitin carboxyl-terminal hydrolase 8 OS=Nelumbo nucifera OX=4432 GN=LOC104590795 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology