Basic Information
Locus ID:
gene_15410
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 16737922 | 16741948 | + | gene_15410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 24,200.98 Da | 65.72 | 68.51 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 97 | 149 | 1.59481E-12 | - |
| Pfam | PF12906 | RING-variant domain | 97 | 148 | 7.3E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 152 | 1.65E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 159 | 1.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 96 | 149 | 3.2E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 89 | 155 | 19.079996 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_022941830.1 | uncharacterized protein LOC111447072 [Cucurbita moschata] | 0 |
| TrEMBL | A0A6J1FUW7 | uncharacterized protein LOC111447072 OS=Cucurbita moschata OX=3662 GN=LOC111447072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology