Basic Information
Locus ID:
gene_1539
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 41837409 | 41841311 | - | gene_1539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 96,020.65 Da | 38.25 | 109.12 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 59 | 2.0E-6 | IPR013210 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 217 | 257 | 3.6E-6 | IPR025875 |
| Pfam | PF13855 | Leucine rich repeat | 407 | 466 | 1.3E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 289 | 308 | 0.57 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 751 | 881 | 4.8E-7 | IPR001245 |
| SUPERFAMILY | SSF52047 | RNI-like | 257 | 583 | 2.67E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 751 | 882 | 5.64E-17 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 47 | 338 | 1.02E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 188 | 6.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 400 | 500 | 6.0E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 287 | 5.4E-25 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 741 | 885 | 4.5E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 288 | 333 | 2.4E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 334 | 399 | 1.7E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 501 | 607 | 1.2E-18 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 168 | 192 | 66.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 548 | 570 | 7.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 216 | 240 | 98.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 405 | 429 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 453 | 477 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 523 | 547 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 357 | 381 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 93 | 116 | 14.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 95 | 115 | 7.365424 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 289 | 302 | 1.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 523 | 536 | 1.3E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_010677302.2 | LRR receptor-like serine/threonine-protein kinase GSO1 [Beta vulgaris subsp. vulgaris] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L047 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12176, jg12184, jg6496, jg6497, jg6499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1539 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022651 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g000900, BVRB_1g000910 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10676, Sgl16007 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000014842, gene:ENSEOMG00000033386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000890, CQ.Regalona.r1.2BG0028100 |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30036320, pistato.v30036330, pistato.v30036350 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G02334 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G011260, COCNU_02G011270, COCNU_15G003240 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701420, gene-LOC103707547, gene-LOC120113031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.652.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G21224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006707m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29610.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g015210.2N, BniB07g015330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1555 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1690, Cgl03G1691 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.1437, evm.TU.LG06.1443, evm.TU.LG06.1445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021811 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12217 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.358, BH05.416, CH05.474, CH05.729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383840, gene-QOZ80_5BG0430670 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0346810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002589 |
| Poaceae | Oryza coarctata | 3 | Oco22G003560, Oco22G003570, Oco23G003130 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g09110.1, LOC_Os11g09130.1, LOC_Os12g08180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G052300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104098, Pt_Chr0703351 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G016750, Chr04G023480, Chr06G025290, Chr19G013010 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G218100, Tel5E01G666800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG034170, gene_TRIDC4BG015650 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G101100.1.cds1, TraesCS4D02G097700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb408490_P001, Zm00001eb408500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25504, nbis-gene-25506, nbis-gene-51111 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17683, Zma_g24840 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1992, evm.TU.LG06.341, evm.TU.LG19.1443 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1302 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18459, nbisL1-mrna-18511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13472 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012031 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18511 |
| Salicaceae | Populus euphratica | 2 | populus_peu16647, populus_peu18940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627123 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002869 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1302 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2340 |