Basic Information
Locus ID:
gene_15274
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 12221133 | 12227125 | + | gene_15274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 53,779.35 Da | 44.74 | 63.67 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 280 | 363 | 4.8E-26 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 385 | - | - |
| Coils | Coil | Coil | 295 | 315 | - | - |
| Coils | Coil | Coil | 428 | 455 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_021858992.1 | protein WVD2-like 4 [Spinacia oleracea] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9DN14 | TPX2 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology