Basic Information
Locus ID:
gene_15266
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 12041120 | 12058744 | + | gene_15266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 102,124.46 Da | 47.22 | 83.07 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 729 | 894 | 7.11776E-60 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 310 | 893 | 5.3E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 305 | 895 | 4.51E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 721 | 898 | 1.7E-56 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 302 | 530 | 2.4E-66 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 310 | 896 | 57.212528 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 311 | 326 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 840 | 857 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021769581.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9S241 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_009050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology