Basic Information
Locus ID:
gene_15245
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 11631092 | 11632727 | + | gene_15245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 42,286.80 Da | 48.03 | 98.03 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 50 | 2.79394E-20 | - |
| Pfam | PF04564 | U-box domain | 7 | 50 | 4.7E-11 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 50 | 8.24E-16 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 86 | 358 | 4.13E-12 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 58 | 1.1E-18 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 73 | 369 | 2.8E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 10 | 79 | 4.8E-12 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 50 | 18.683884 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010677541.1 | E3 ubiquitin-protein ligase PUB23 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EZN8 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology