Basic Information
Locus ID:
gene_15233
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 49277641 | 49283908 | - | gene_15233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 98,666.83 Da | 56.02 | 80.41 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 807 | 848 | 1.57615E-21 | - |
| CDD | cd01989 | STK_N | 41 | 194 | 2.9752E-54 | - |
| Pfam | PF04564 | U-box domain | 804 | 874 | 1.2E-17 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 520 | 772 | 1.0E-39 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 56 | 170 | 6.03E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 803 | 874 | 2.3E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 496 | 782 | 6.34E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 802 | 876 | 2.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 590 | 788 | 1.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 496 | 589 | 1.1E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 38 | 191 | 8.1E-10 | IPR014729 |
| SMART | SM00220 | serkin_6 | 517 | 779 | 2.3E-31 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 806 | 869 | 1.2E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 802 | 876 | 31.227087 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 517 | 785 | 33.95483 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 635 | 647 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 523 | 544 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 234 | - | - |
| Coils | Coil | Coil | 433 | 488 | - | - |
| Coils | Coil | Coil | 335 | 366 | - | - |
| Coils | Coil | Coil | 370 | 404 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_024451156.1 | U-box domain-containing protein 33 [Populus trichocarpa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A5AUS0 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VITISV_015820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology