Basic Information
Locus ID:
gene_15217
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 10855759 | 10860113 | + | gene_15217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 65,344.91 Da | 28.66 | 88.18 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 7.41683E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 2.76701E-89 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 211 | 8.7E-36 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 358 | 3.3E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 2.4E-15 | IPR011766 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 236 | 383 | 1.9E-32 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 1.23E-41 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 218 | 1.16E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 1.6E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 216 | 8.5E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 398 | 590 | 2.2E-55 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 6.8E-209 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 465 | 484 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010676788.2 | pyruvate decarboxylase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMI0 | pyruvate decarboxylase OS=Spinacia oleracea OX=3562 GN=SOVF_162420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology