Basic Information
Locus ID:
gene_15216
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 10827666 | 10845771 | + | gene_15216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 121,139.35 Da | 31.41 | 82.87 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 912 | 1094 | 1.97966E-80 | - |
| CDD | cd06257 | DnaJ | 28 | 81 | 4.97292E-26 | IPR001623 |
| Pfam | PF00226 | DnaJ domain | 28 | 89 | 7.9E-27 | IPR001623 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 957 | 1082 | 5.6E-16 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 747 | 864 | 2.4E-18 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 561 | 717 | 1.7E-15 | IPR012001 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 201 | 314 | 2.76E-15 | IPR036249 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 912 | 1099 | 3.4E-41 | IPR029061 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 25 | 113 | 9.68E-31 | IPR036869 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 736 | 889 | 1.57E-29 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 561 | 726 | 4.36E-21 | IPR029061 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 204 | 314 | 1.7E-11 | - |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 27 | 178 | 1.4E-30 | IPR036869 |
| Gene3D | G3DSA:3.40.50.970 | - | 557 | 722 | 1.0E-30 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 737 | 899 | 7.1E-38 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 905 | 1096 | 7.5E-56 | - |
| SMART | SM00271 | dnaj_3 | 27 | 84 | 9.0E-30 | IPR001623 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 28 | 92 | 23.095844 | IPR001623 |
| ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 69 | 88 | - | IPR018253 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 971 | 990 | - | IPR000399 |
| PRINTS | PR00625 | DnaJ domain signature | 84 | 103 | 3.8E-24 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 30 | 48 | 3.8E-24 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 48 | 63 | 3.8E-24 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 64 | 84 | 3.8E-24 | IPR001623 |
| Coils | Coil | Coil | 406 | 429 | - | - |
| Coils | Coil | Coil | 62 | 82 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010676788.2 | pyruvate decarboxylase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMI0 | pyruvate decarboxylase OS=Spinacia oleracea OX=3562 GN=SOVF_162420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology