Basic Information
Locus ID:
gene_15188
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ring U-Box superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 10395558 | 10405607 | + | gene_15188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 52,721.56 Da | 56.86 | 79.24 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16040 | Domain of unknown function (DUF4792) | 148 | 213 | 5.7E-21 | IPR032008 |
| Pfam | PF16041 | Domain of unknown function (DUF4793) | 239 | 344 | 2.1E-27 | IPR032010 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 421 | 469 | 9.1E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 423 | 469 | 2.79E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 406 | 475 | 2.3E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 424 | 463 | 10.453364 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01450.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021845127.1 | uncharacterized protein LOC110784990 isoform X1 [Spinacia oleracea] | 0 |
| Q6DBH0 | E3 ubiquitin-protein ligase APD2 OS=Arabidopsis thaliana OX=3702 GN=APD2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EUD2 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15188, gene_5787 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003400 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g102700, BVRB_7g172140 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg20417, Sbi_jg23362, Sbi_jg23363, Sbi_jg4724 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12670, Seu_jg17145 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001406, GOSA_00003365 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51715, Sgl57022, Sgl72790, Sgl76329 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006743, gene:ENSEOMG00000024084 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0009950, CQ.Regalona.r1.5BG0010510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061440, pistato.v30267010 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008440 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708175 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1631.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G38185.4, AT2G38195.1, AT2G38220.1, AT5G01450.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016735m.g.v1.0, Thhalv10017777m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g20510.v2.2, Sp6g40740.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g006410.2N, BniB08g000300.2N, BniB08g024250.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1017, Ceq08G1877 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1039 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g18630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g13110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8656 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1019, evm.TU.LG09.1092 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002747 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G08507, Lb2G09198, Lb3G19181, Lb3G19182 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0366170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0076810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015937 |
| Poaceae | Oryza coarctata | 2 | Oco09G014540, Oco10G014510 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g43320.1, LOC_Os05g44550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G206900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504032, Pt_Chr0504120 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G020030, Chr18G014200, Chr22G003320 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG050460, gene_TRIDC1BG057290 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G341400.1, TraesCS1B02G354100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-56259 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28628 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.2874, evm.TU.LG10.514, evm.TU.LG16.761 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00030 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.127, evm.TU.Scaffold_1_RagTag.1816 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24669, nbisL1-mrna-4558, nbisL1-mrna-5603 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1388, nbisL1-mrna-15467, nbisL1-mrna-20896 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-19440, nbisL1-mrna-3698, nbisL1-mrna-9576 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.1020, evm.TU.utg000016l.696 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00005666, Maker00016355, Maker00018169 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2687, nbisL1-mrna-4955, nbisL1-mrna-5502 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11660, nbisL1-mrna-13763, nbisL1-mrna-16695 |
| Salicaceae | Populus euphratica | 5 | populus_peu01990, populus_peu01997, populus_peu01998 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630783 |
| Solanaceae | Solanum chilense | 1 | SOLCI006213400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029553 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.9406_chr03_+, gene_12270 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0291, TC11G1198 |