Basic Information
Locus ID:
gene_15158
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 9773600 | 9790122 | + | gene_15158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 135,731.84 Da | 45.98 | 73.75 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 31 | 71 | 1.6E-6 | IPR001841 |
| Pfam | PF00628 | PHD-finger | 147 | 182 | 9.9E-9 | IPR019787 |
| Pfam | PF15870 | ElonginA binding-protein 1 | 799 | 905 | 2.3E-6 | IPR031736 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 148 | 184 | 3.32E-11 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 77 | 1.44E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 191 | 7.8E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 93 | 3.6E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 124 | 182 | 3.8E-6 | IPR001965 |
| SMART | SM00184 | ring_2 | 32 | 70 | 3.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 71 | 11.22052 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 64 | 184 | 8.7335 | IPR019787 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 48 | 57 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1145 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10930.2 | - | 0 |
| RefSeq | XP_010676269.2 | uncharacterized protein At4g10930 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L7I1 | Uncharacterized protein At4g10930 OS=Arabidopsis thaliana OX=3702 GN=At4g10930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9REZ9 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_074350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4716 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15158 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003895 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098620 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24060, Sbi_jg7903 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12138 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010665, GOSA_00010666 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52250, Sgl57503 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005683, gene:ENSEOMG00000021196 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005670, CQ.Regalona.r1.5BG0005960 |
| Apiaceae | Apium graveolens | 1 | Ag1G00053 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G005090 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714205 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1987.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G26481 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10930.1, AT4G10940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028398m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g059210.2N, BniB07g004840.2N, BniB08g036190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0546 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0655 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0328s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1554 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005397 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24673, Lb4G24684 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3003, BH02.3086, CH02.3436 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0081350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0285480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015041, gene-QYE76_015042 |
| Poaceae | Oryza coarctata | 2 | Oco02G019400, Oco23G003700 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g10700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G258500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203035, Pt_Chr0505804 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G011090, Chr05G022590, Chr08G015170, Chr0G030780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G471900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG042470, gene_TRIDC3BG048420 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G287900.3, TraesCS3B02G322600.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb209080_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8543 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3258, evm.TU.LG10.124, evm.TU.LG13.1554 ... |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc03g22090, gene.Posoc07g08450, gene.Posoc07g08460 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.89, evm.TU.Scaffold_14_RagTag.90 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18314 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2909 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8639 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.341 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018511 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15960 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11005 |
| Salicaceae | Populus euphratica | 1 | populus_peu03703 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603796 |
| Solanaceae | Solanum chilense | 1 | SOLCI005546800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007354 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13855 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3091 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12420.v3.1 |