Basic Information
Locus ID:
gene_15148
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 20748207 | 20748930 | - | gene_15148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.03 | 9,693.42 Da | 34.61 | 97.50 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 61 | 2.11823E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 7.5E-28 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 73 | 1.7E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 75 | 2.5E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 6.3E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.819073 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 5.3E-32 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 5.3E-32 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 5.3E-32 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11880.2 | - | 0 |
| RefSeq | XP_007134937.1 | hypothetical protein PHAVU_010G088100g [Phaseolus vulgaris] | 0 |
| Q9XJ60 | MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1 | 0 | |
| TrEMBL | A0A452YRT4 | MADS-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology