halophFGD

Basic Information

Locus ID: gene_15073

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: 4-coumarate--CoA ligase-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_3_Chr_1	8238309	8241929	+	gene_15073

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.24	55,210.72 Da	31.89	97.50	0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05904	4CL	36	503	0.0	-
Pfam	PF13193	AMP-binding enzyme C-terminal domain	423	497	9.7E-17	IPR025110
Pfam	PF00501	AMP-binding enzyme	58	232	1.2E-28	IPR000873
Pfam	PF00501	AMP-binding enzyme	241	413	1.3E-48	IPR000873
SUPERFAMILY	SSF56801	Acetyl-CoA synthetase-like	47	509	3.27E-117	-
Gene3D	G3DSA:3.30.300.30	-	412	510	1.0E-31	-
Gene3D	G3DSA:3.40.50.980	-	70	220	1.9E-37	-
Gene3D	G3DSA:3.40.50.980	-	65	235	1.9E-37	-
Gene3D	G3DSA:3.40.50.12780	-	243	411	4.3E-49	IPR042099
ProSitePatterns	PS00455	Putative AMP-binding domain signature.	204	215	-	IPR020845

KEGG Pathway

KO Term:

K01904 (4-coumarate--CoA ligase [EC:6.2.1.12])

Pathway:

ko00130 (Ubiquinone and other terpenoid-quinone biosynthesis) map00130 (Ubiquinone and other terpenoid-quinone biosynthesis) ko00360 (Phenylalanine metabolism) map00360 (Phenylalanine metabolism) ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00039 (Monolignol biosynthesis, phenylalanine/tyrosine => monolignol) M00137 (Flavanone biosynthesis, phenylalanine => naringenin)

Reaction:

R01616 (ATP + 4-Coumarate + CoA <=> AMP + Diphosphate + p-Coumaroyl-CoA) R01943 (ATP + Caffeate + CoA <=> AMP + Diphosphate + Caffeoyl-CoA) R02194 (ATP + Ferulate + CoA <=> AMP + Diphosphate + Feruloyl-CoA) R02221 (ATP + Sinapate + CoA <=> AMP + Diphosphate + Sinapoyl-CoA) R02255 (ATP + trans-Cinnamate + CoA <=> AMP + Diphosphate + Cinnamoyl-CoA) R06583 (5-Hydroxyferulic acid + CoA + ATP <=> 5-Hydroxyferuloyl-CoA + AMP + Diphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19010.1	AMP-dependent synthetase and ligase family protein.
RefSeq	XP_010677414.1	4-coumarate--CoA ligase-like 6 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q84P24	4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana OX=3702 GN=4CLL6 PE=1 SV=2
TrEMBL	A0A7C9FIZ3	4-coumarate--CoA ligase-like 6 (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg23598, jg23601, jg39700
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15073
Amaranthaceae	Atriplex hortensis	1	Ah004411
Amaranthaceae	Beta vulgaris	1	BVRB_5g107340
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg23785, Sbi_jg7617
Amaranthaceae	Salicornia europaea	1	Seu_jg12402
Amaranthaceae	Suaeda glauca	2	Sgl51212, Sgl56512
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000021123, gene:ENSEOMG00000024829
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0001480, CQ.Regalona.r1.5BG0001620
Anacardiaceae	Pistacia vera	1	pistato.v30030150
Apiaceae	Apium graveolens	1	Ag6G00850
Arecaceae	Cocos nucifera	1	COCNU_07G003350
Arecaceae	Phoenix dactylifera	1	gene-LOC103708041
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1029.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G06178, Ftri14G09068, Ftri14G21456, Ftri7G01885
Brassicaceae	Arabidopsis thaliana	1	AT4G19010.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10024787m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g17740.v2.2
Brassicaceae	Brassica nigra	1	BniB05g017370.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0142, Ceq01G0143
Casuarinaceae	Casuarina glauca	2	Cgl01G0129, Cgl01G0131
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno12g05040
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g07080
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.894
Plantaginaceae	Plantago ovata	2	Pov_00003819, Pov_00029632
Plumbaginaceae	Limonium bicolor	2	Lb2G14294, Lb3G19650
Poaceae	Echinochloa crus-galli	3	AH01.2759, BH01.3089, CH01.3312
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_2AG0118500
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0053690.1
Poaceae	Lolium multiflorum	2	gene-QYE76_012968, gene-QYE76_037589
Poaceae	Oryza coarctata	3	Oco16G001940, Oco19G011200, Oco20G011080
Poaceae	Oryza sativa	2	LOC_Os08g04770.1, LOC_Os10g42800.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G271500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503428, Pt_Chr0503469
Poaceae	Sporobolus alterniflorus	4	Chr09G006410, Chr13G018320, Chr13G018420, Chr13G018550
Poaceae	Thinopyrum elongatum	1	Tel1E01G340700
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG029890, gene_TRIDC1BG035380
Poaceae	Triticum aestivum	3	TraesCS1A02G196700.1, TraesCS1B02G211300.1 ... TraesCS1D02G200200.1
Poaceae	Zea mays	1	Zm00001eb025180_P003
Poaceae	Zoysia japonica	1	nbis-gene-38192
Poaceae	Zoysia macrostachya	1	Zma_g15776
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.629, evm.TU.LG17.640
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g00940
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-22782
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13326
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20461
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3634
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-6832
Salicaceae	Populus euphratica	1	populus_peu34108
Solanaceae	Lycium barbarum	2	gene-LOC132635382, gene-LOC132635383
Solanaceae	Solanum chilense	1	SOLCI005934200
Solanaceae	Solanum pennellii	1	gene-LOC107027934
Tamaricaceae	Reaumuria soongarica	1	gene_16142
Zosteraceae	Zostera marina	1	Zosma06g20980.v3.1