Basic Information
Locus ID:
gene_15030
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 7322017 | 7325882 | + | gene_15030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 45,007.61 Da | 60.10 | 73.80 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 171 | 214 | 1.02279E-16 | - |
| Pfam | PF13639 | Ring finger domain | 171 | 214 | 3.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 227 | 3.77E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 221 | 8.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 172 | 213 | 3.9E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 168 | 222 | 9.4E-4 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 214 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 137 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017972774.1 | PREDICTED: E3 ubiquitin-protein ligase Os04g0590900 [Theobroma cacao] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A061GAA2 | RING-type E3 ubiquitin transferase OS=Theobroma cacao OX=3641 GN=TCM_015695 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology