Basic Information
Locus ID:
gene_1500
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 41130801 | 41132204 | - | gene_1500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 41,409.58 Da | 77.03 | 76.42 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 232 | 274 | 1.16843E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 18 | 51 | 1.1E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 232 | 274 | 8.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 218 | 279 | 2.87E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 280 | 5.7E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 233 | 273 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 274 | 12.297489 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 134 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021838461.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Spinacia oleracea] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QRX9 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_155210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology