Basic Information
Locus ID:
gene_14980
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 6532574 | 6540002 | + | gene_14980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 82,976.92 Da | 45.92 | 89.46 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 337 | 377 | 1.8E-12 | IPR001810 |
| Pfam | PF00646 | F-box domain | 10 | 50 | 1.8E-12 | IPR001810 |
| Pfam | PF07734 | F-box associated | 219 | 325 | 2.9E-5 | IPR006527 |
| Pfam | PF07734 | F-box associated | 546 | 662 | 3.4E-5 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 453 | 705 | 4.58E-7 | IPR011043 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 112 | 328 | 2.35E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 334 | 387 | 7.72E-18 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 77 | 8.76E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 65 | 2.1E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 331 | 391 | 1.0E-9 | - |
| SMART | SM00256 | fbox_2 | 337 | 377 | 7.1E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 7.1E-12 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 123 | 325 | 5.0E-22 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 450 | 674 | 4.5E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 337 | 377 | 10.424773 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 50 | 10.424773 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_048494012.1 | F-box/kelch-repeat protein At3g23880 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0J8B5K8 | F-box domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_012580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14979, gene_14980, gene_15000, gene_16994, gene_2093 ... |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003124, Ah012204, Ah031133, Ah031136 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26525, Sbi_jg26526, Sbi_jg29415, Sbi_jg34037 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15056, Seu_jg6323 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00000790, GOSA_00000791, GOSA_00000792, GOSA_00011322 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl12017, Sgl15992, Sgl31878, Sgl37156, Sgl46157, Sgl46158 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000022421, gene:ENSEOMG00000034528 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0000690, CQ.Regalona.r1.2BG0028260 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.202 |