Basic Information
Locus ID:
gene_14948
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 5897177 | 5898610 | + | gene_14948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 48,954.17 Da | 44.28 | 108.85 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 57 | 2.4E-4 | IPR001810 |
| Pfam | PF08387 | FBD | 318 | 364 | 1.6E-5 | IPR006566 |
| SUPERFAMILY | SSF52047 | RNI-like | 114 | 307 | 8.63E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 74 | 4.71E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 114 | 333 | 1.9E-7 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49030.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_021851257.1 | F-box/FBD/LRR-repeat protein At5g22660-like [Spinacia oleracea] | 0 |
| Q9SMU0 | Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana OX=3702 GN=At3g49030 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803N0E2 | FBD domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14947, gene_14948, gene_14949 |