Basic Information
Locus ID:
gene_14947
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 5884292 | 5888815 | + | gene_14947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 59,169.31 Da | 45.95 | 97.26 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 32 | 69 | 1.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 73 | 2.88E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 169 | 512 | 1.6E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 71 | 2.5E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 30 | 66 | 9.073559 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22700.6 | - | 0 |
| RefSeq | XP_021765514.1 | F-box/FBD/LRR-repeat protein At5g22660-like [Chenopodium quinoa] | 0 |
| Q9FNJ1 | F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LUC9 | BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14947, gene_14948, gene_14949 |