Basic Information
Locus ID:
gene_14880
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
bHLH-MYC and R2R3-MYB transcription factors N-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 4424869 | 4426486 | + | gene_14880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 51,579.96 Da | 47.89 | 89.73 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04873 | ACT_UUR-ACR-like | 398 | 451 | 0.00470661 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 266 | 314 | 8.6E-11 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 46 | 224 | 1.2E-20 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 262 | 328 | 1.27E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 255 | 331 | 2.5E-17 | IPR036638 |
| SMART | SM00353 | finulus | 271 | 320 | 7.7E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 265 | 314 | 16.90094 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 278 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_039058050.1 | transcription factor MYC2-like [Hibiscus syriacus] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3CC15 | Transcription factor MYC2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00007432pilonHSYRG00005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology