Basic Information
Locus ID:
gene_14879
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 4405088 | 4406593 | + | gene_14879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 53,874.27 Da | 47.43 | 83.74 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04873 | ACT_UUR-ACR-like | 421 | 474 | 6.66055E-4 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 77 | 263 | 7.7E-20 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 314 | 363 | 2.3E-11 | IPR011598 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 280 | 289 | 1.26E-5 | - |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 313 | 380 | 1.44E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 306 | 378 | 8.7E-17 | IPR036638 |
| SMART | SM00353 | finulus | 319 | 368 | 1.3E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 313 | 362 | 16.919992 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 325 | - | - |
| Coils | Coil | Coil | 359 | 379 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_028805903.1 | transcription factor MYC2-like [Prosopis alba] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3CC15 | Transcription factor MYC2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00007432pilonHSYRG00005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology