Basic Information
Locus ID:
gene_14860
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 89960298 | 89976062 | + | gene_14860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 72,512.29 Da | 40.99 | 70.32 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 362 | 391 | 4.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 433 | 458 | 0.037 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 529 | 644 | 1.2E-35 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 266 | 290 | 0.26 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 331 | 359 | 1.9E-6 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 262 | 424 | 2.7E-32 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 331 | 360 | 4.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 266 | 293 | 0.0031 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 362 | 394 | 4.6E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 328 | 358 | 10.380408 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | 11.279235 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_034684441.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Vitis riparia] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | F6H3U1 | DYW_deaminase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g05070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology