Basic Information
Locus ID:
gene_14801
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 2995760 | 3003636 | + | gene_14801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 24,276.42 Da | 57.31 | 87.92 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 5.65228E-44 | IPR033896 |
| Pfam | PF01486 | K-box region | 87 | 172 | 6.4E-24 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 5.5E-28 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 2.88E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 93 | 5.1E-30 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.5E-42 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 178 | 14.421082 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.917196 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.4E-30 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 198 | - | - |
| Coils | Coil | Coil | 88 | 115 | - | - |
| Coils | Coil | Coil | 122 | 171 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_021754068.1 | MADS-box protein SOC1-like isoform X1 [Chenopodium quinoa] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZRJ2 | MADS-box protein SOC1 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology