Basic Information
Locus ID:
gene_14770
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 2442180 | 2466189 | + | gene_14770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 33,767.65 Da | 40.12 | 105.83 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 103 | 214 | 1.08E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 47 | 5.23E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 218 | 2.5E-19 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 42 | 9.153042 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_026407056.1 | F-box/LRR-repeat protein At3g48880-like [Papaver somniferum] | 0 |
| TrEMBL | A0A1U7ZMX3 | F-box/LRR-repeat protein At3g48880 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104596131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33990 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14770, gene_14772, gene_7618 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027950 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30163150, pistato.v30163280 |
| Apiaceae | Apium graveolens | 12 | Ag10G01784, Ag3G00412, Ag3G00413, Ag3G01169, Ag4G01676 ... |
| Arecaceae | Cocos nucifera | 5 | COCNU_06G018500, COCNU_06G018510, COCNU_06G018520 ... |
| Arecaceae | Phoenix dactylifera | 9 | gene-LOC103696496, gene-LOC103709792, gene-LOC103709805 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.603.V1.1, AsparagusV1_03.604.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G23199 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G48880.1, AT4G11580.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10005418m.g.v1.0, Thhalv10005421m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g23500.v2.2, Sp5g13170.v2.2, Sp5g15070.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g019570.2N, BniB03g044870.2N, BniB05g048770.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g02200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22980 |
| Nitrariaceae | Nitraria sibirica | 8 | evm.TU.LG01.2709, evm.TU.LG02.1995, evm.TU.LG02.1996 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040948 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1229, AH01.1669, AH03.2205, BH01.1867, CH01.1973 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112800, gene-QOZ80_2BG0166180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0048040.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011884, gene-QYE76_016614, gene-QYE76_063504 |
| Poaceae | Oryza coarctata | 5 | Oco05G018710, Oco06G019490, Oco19G007410, Oco20G007320 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os03g43770.1, LOC_Os08g04550.1, LOC_Os10g35920.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G146500, gene-BS78_04G076000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502836 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009640, Chr04G024720, Chr06G029970, Chr07G023510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G311200, Tel5E01G599800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG026450, gene_TRIDC1BG031920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G173500.3, TraesCS1B02G190900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb044180_P002 |
| Poaceae | Zoysia japonica | 8 | nbis-gene-12433, nbis-gene-13418, nbis-gene-20188 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12709, Zma_g15200, Zma_g3217, Zma_g894 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1367, evm.TU.Scaffold_4_RagTag.132 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12666, nbisL1-mrna-29209 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7237, nbisL1-mrna-9851 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12937, nbisL1-mrna-2149 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.81, evm.TU.utg000008l.82 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000511, Maker00008977 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1065, nbisL1-mrna-2361 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20605, nbisL1-mrna-6270 |
| Salicaceae | Populus euphratica | 6 | populus_peu00840, populus_peu26417, populus_peu29244 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132606495, gene-LOC132631880, gene-LOC132631886 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000293500, SOLCI002365900, SOLCI005115700 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107012666, gene-LOC107012727, gene-LOC107014731 |