halophFGD

Basic Information

Locus ID: gene_14741

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Belongs to the class-I aminoacyl-tRNA synthetase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_3_Chr_1	2062527	2065967	+	gene_14741

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.30	44,516.70 Da	55.04	74.86	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00579	tRNA synthetases class I (W and Y)	70	365	1.9E-65	IPR002305
SUPERFAMILY	SSF52374	Nucleotidylyl transferase	49	376	1.01E-73	-
Gene3D	G3DSA:3.40.50.620	HUPs	202	391	2.4E-80	IPR014729
Gene3D	G3DSA:3.40.50.620	HUPs	37	201	4.0E-67	IPR014729
PIRSF	PIRSF006588	TyrRS_arch_euk	41	390	3.8E-141	IPR023617
MobiDBLite	mobidb-lite	consensus disorder prediction	8	40	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	41	-	-

Gene Ontology

Biological Process:

GO:0006418 (tRNA aminoacylation for protein translation)

Molecular Function:

GO:0000166 (nucleotide binding) GO:0004812 (aminoacyl-tRNA ligase activity) GO:0004831 (tyrosine-tRNA ligase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K01866 (tyrosyl-tRNA synthetase [EC:6.1.1.1])

Pathway:

ko00970 (Aminoacyl-tRNA biosynthesis) map00970 (Aminoacyl-tRNA biosynthesis)

Reaction:

R02918 (ATP + L-Tyrosine + tRNA(Tyr) <=> AMP + Diphosphate + L-Tyrosyl-tRNA(Tyr))

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33840.1	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial.
RefSeq	XP_034702197.1	tyrosine--tRNA ligase 1, cytoplasmic-like [Vitis riparia]
Swiss-Prot	Q8S9J2	Tyrosine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At2g33840 PE=2 SV=1
TrEMBL	A0A7C8ZR62	tyrosine--tRNA ligase OS=Opuntia streptacantha OX=393608 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg19205, jg21239
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14741, gene_15235
Amaranthaceae	Atriplex hortensis	1	Ah023527
Amaranthaceae	Beta vulgaris	1	BVRB_7g162780
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg27676, Sbi_jg32642, Sbi_jg62751
Amaranthaceae	Salicornia europaea	2	Seu_jg24088, Seu_jg7655
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028003
Amaranthaceae	Suaeda glauca	2	Sgl71615, Sgl75185
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000015473, gene:ENSEOMG00000036941 ... gene:ENSEOMG00000048654
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.1BG0016500
Anacardiaceae	Pistacia vera	2	pistato.v30165970, pistato.v30242440
Apiaceae	Apium graveolens	1	Ag11G03730
Arecaceae	Cocos nucifera	1	COCNU_07G005420
Arecaceae	Phoenix dactylifera	1	gene-LOC103716533
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1705.V1.1, AsparagusV1_08.308.V1.1 ... AsparagusV1_08.345.V1.1
Asteraceae	Flaveria trinervia	2	Ftri14G14889, Ftri15G11369
Brassicaceae	Arabidopsis thaliana	2	AT1G28350.1, AT2G33840.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10016782m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g24590.v2.2
Brassicaceae	Brassica nigra	2	BniB03g017090.2N, BniB03g033210.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq05G0781, Ceq05G0783, Ceq05G0787, Ceq05G0788, Ceq05G0791
Casuarinaceae	Casuarina glauca	2	Cgl05G0791, Cgl05G0797
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno12g04140
Dunaliellaceae	Dunaliella salina	1	Dusal.0469s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g10410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-667
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1981
Plantaginaceae	Plantago ovata	2	Pov_00000060, Pov_00040225
Plumbaginaceae	Limonium bicolor	2	Lb2G09254, Lb2G09273
Poaceae	Echinochloa crus-galli	8	AH01.78, AH08.302, BH01.845, BH02.3292, BH08.304, CH01.3100 ... CH07.3149, CH08.380
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0143650, gene-QOZ80_2BG0199000 ... gene-QOZ80_2BG0199030, gene-QOZ80_3BG0279760, gene-QOZ80_7AG0571930, gene-QOZ80_8AG0617240, gene-QOZ80_8BG0644860, gene-QOZ80_9AG0691250, gene-QOZ80_9BG0717520
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0701140.1
Poaceae	Lolium multiflorum	42	gene-QYE76_005729, gene-QYE76_007565, gene-QYE76_007572 ... gene-QYE76_021139, gene-QYE76_024967, gene-QYE76_032499, gene-QYE76_032529, gene-QYE76_043805, gene-QYE76_043806, gene-QYE76_043807, gene-QYE76_043808, gene-QYE76_050563, gene-QYE76_056566, gene-QYE76_056577, gene-QYE76_056624, gene-QYE76_056648, gene-QYE76_056649, gene-QYE76_056651, gene-QYE76_056652, gene-QYE76_056653, gene-QYE76_056654, gene-QYE76_056655, gene-QYE76_056656, gene-QYE76_056657, gene-QYE76_056658, gene-QYE76_056659, gene-QYE76_056660, gene-QYE76_056661, gene-QYE76_056662, gene-QYE76_056663, gene-QYE76_056664, gene-QYE76_056665, gene-QYE76_056667, gene-QYE76_056668, gene-QYE76_056669, gene-QYE76_058455, gene-QYE76_059068, gene-QYE76_061188, gene-QYE76_061190, gene-QYE76_061191, gene-QYE76_061193, gene-QYE76_061197
Poaceae	Oryza coarctata	6	Oco15G001990, Oco15G003710, Oco15G006050, Oco16G002050 ... Oco16G003630, Oco16G005900
Poaceae	Oryza sativa	5	LOC_Os04g58400.1, LOC_Os07g47860.1, LOC_Os08g05490.1 ... LOC_Os08g09260.1, LOC_Os08g23110.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G257000, gene-BS78_07G043300 ... gene-BS78_07G198500
Poaceae	Puccinellia tenuiflora	15	Pt_Chr0104654, Pt_Chr0104958, Pt_Chr0105394, Pt_Chr0105395 ... Pt_Chr0105477, Pt_Chr0105478, Pt_Chr0106995, Pt_Chr0202267, Pt_Chr0203391, Pt_Chr0204832, Pt_Chr0204833, Pt_Chr0304476, Pt_Chr0305639, Pt_Chr0405594, Pt_Chr0703515
Poaceae	Sporobolus alterniflorus	5	Chr06G003520, Chr16G001110, Chr17G001050, Chr20G010690 ... Chr29G011650
Poaceae	Thinopyrum elongatum	5	Tel1E01G530400, Tel6E01G347900, Tel6E01G520800 ... Tel6E01G766200, Tel7E01G524800
Poaceae	Triticum dicoccoides	9	gene_TRIDC5AG041010, gene_TRIDC5BG043460 ... gene_TRIDC6AG025260, gene_TRIDC6AG060720, gene_TRIDC6BG031480, gene_TRIDC6BG051180, gene_TRIDC6BG072560, gene_TRIDC7AG042550, gene_TRIDC7BG033670
Poaceae	Triticum aestivum	12	TraesCS5A02G198600.1, TraesCS5A02G270800.1 ... TraesCS6A02G413600.1, TraesCS6B02G109700.1, TraesCS6B02G204800.1, TraesCS6B02G313700.1, TraesCS6B02G462900.1, TraesCS7A02G087100.1.cds1, TraesCS7A02G304700.1, TraesCS7B02G205000.2, TraesCS7D02G081600.1.cds1, TraesCS7D02G300200.1
Poaceae	Zea mays	2	Zm00001eb172860_P001, Zm00001eb416340_P002
Poaceae	Zoysia japonica	4	nbis-gene-39112, nbis-gene-45835, nbis-gene-45837 ... nbis-gene-45935
Poaceae	Zoysia macrostachya	1	Zma_g22460
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.602, evm.TU.LG26.429
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g02350
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.1394, evm.TU.Scaffold_9_RagTag.1275
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11911, nbisL1-mrna-20893
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-8464, nbisL1-mrna-8716
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11065, nbisL1-mrna-21260
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.785, evm.TU.utg000006l.815
Rhizophoraceae	Kandelia obovata	2	Maker00009375, Maker00013434
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10340, nbisL1-mrna-10341, nbisL1-mrna-1269
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-4800
Salicaceae	Populus euphratica	2	populus_peu06000, populus_peu19861
Solanaceae	Lycium barbarum	1	gene-LOC132599145
Solanaceae	Solanum chilense	1	SOLCI003001500
Solanaceae	Solanum pennellii	1	gene-LOC107008204
Tamaricaceae	Reaumuria soongarica	3	MSTRG.3982_chr02_+, gene_1267, gene_13912
Tamaricaceae	Tamarix chinensis	1	TC01G4284
Zosteraceae	Zostera marina	1	Zosma05g00470.v3.1