Basic Information
Locus ID:
gene_14697
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 1316481 | 1323396 | + | gene_14697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 94,359.88 Da | 46.60 | 89.31 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 556 | 689 | 1.42572E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 712 | 754 | 1.1E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 558 | 688 | 1.1E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 62 | 348 | 4.44E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 518 | 757 | 5.06E-62 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 690 | 771 | 1.5E-97 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 517 | 689 | 1.5E-97 | IPR027417 |
| SMART | SM00382 | AAA_5 | 554 | 691 | 2.9E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 661 | 680 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 752 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 502 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_010676392.2 | ribosome biogenesis ATPase RIX7 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RKA8 | AAA domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_056920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology