Basic Information
Locus ID:
gene_14681
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 1022859 | 1031944 | + | gene_14681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 115,636.32 Da | 46.66 | 75.50 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 778 | 816 | 0.025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 868 | 900 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 691 | 987 | 1.2E-47 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 268 | 509 | 9.87E-16 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 668 | 1006 | 2.5E-120 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 267 | 512 | 5.1E-20 | - |
| SMART | SM00320 | WD40_4 | 734 | 773 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 776 | 816 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 723 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 819 | 858 | 0.0023 | IPR001680 |
| SMART | SM00220 | serkin_6 | 207 | 506 | 0.0034 | IPR000719 |
| SMART | SM00320 | WD40_4 | 862 | 900 | 4.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 740 | 782 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 168 | 506 | 9.008318 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 869 | 902 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 869 | 902 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 783 | 825 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 887 | 901 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 760 | 774 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 760 | 774 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 887 | 901 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 803 | 817 | 6.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 145 | - | - |
| Coils | Coil | Coil | 547 | 567 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology