Basic Information
Locus ID:
gene_14623
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 40474 | 66320 | + | gene_14623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 122,372.45 Da | 46.02 | 86.51 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 882 | 1022 | 7.84183E-49 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 463 | 1022 | 1.0E-78 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 191 | 288 | 3.0E-23 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 460 | 1022 | 2.55E-102 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 167 | 288 | 2.62E-27 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 446 | 655 | 3.1E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 838 | 1033 | 2.2E-47 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 302 | 385 | 4.4E-9 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 154 | 301 | 8.8E-39 | - |
| SMART | SM00695 | dusp | 186 | 291 | 8.3E-29 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 167 | 288 | 19.490223 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 462 | 1037 | 51.848003 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 981 | 998 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 463 | 478 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_021757775.1 | ubiquitin carboxyl-terminal hydrolase 10-like [Chenopodium quinoa] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8YSW4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology