Basic Information
Locus ID:
gene_14558
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
chitin elicitor receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 34144711 | 34154083 | - | gene_14558 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 66,732.06 Da | 30.65 | 93.02 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 322 | 582 | 2.69583E-87 | - |
| Pfam | PF01476 | LysM domain | 170 | 195 | 0.021 | IPR018392 |
| Pfam | PF01476 | LysM domain | 102 | 136 | 0.083 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 318 | 584 | 3.3E-46 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 298 | 585 | 1.75E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 387 | 600 | 1.2E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 297 | 386 | 4.4E-26 | - |
| SMART | SM00257 | LysM_2 | 38 | 85 | 0.8 | IPR018392 |
| SMART | SM00220 | serkin_6 | 316 | 588 | 7.8E-41 | IPR000719 |
| SMART | SM00257 | LysM_2 | 166 | 208 | 3.9 | IPR018392 |
| SMART | SM00257 | LysM_2 | 101 | 147 | 0.63 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 165 | 208 | 8.529457 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 316 | 588 | 38.689716 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 100 | 146 | 9.50357 | IPR018392 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 322 | 344 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 431 | 443 | - | IPR008271 |
| Coils | Coil | Coil | 613 | 613 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21630.1 | chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. | 0 |
| RefSeq | XP_021850694.1 | lysM domain receptor-like kinase 3 [Spinacia oleracea] | 0 |
| Q6UD73 | LysM domain receptor-like kinase 3 OS=Medicago truncatula OX=3880 GN=LYK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RWX1 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_024950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology