Basic Information
Locus ID:
gene_14496
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 32828822 | 32829910 | - | gene_14496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 28,499.25 Da | 34.02 | 81.04 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 50 | 2.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 101 | 1.03E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 61 | 4.3E-7 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 0.0011 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 58 | 10.663223 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050241692.1 | F-box protein At3g07870-like [Quercus robur] | 0 |
| TrEMBL | A0A7N2KQH2 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14496 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl82814 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044096 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102390 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1.V1.1, AsparagusV1_03.2.V1.1 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00028667, Pov_00041475 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4812 |