halophFGD

Basic Information

Locus ID: gene_14361

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Protein BREAST CANCER SUSCEPTIBILITY

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_1_Chr_9	28838676	28840404	-	gene_14361

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.32	15,969.05 Da	58.09	61.54	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13771	PHD-like zinc-binding domain	18	81	1.7E-10	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	8	84	3.0E-18	IPR013083
ProSiteProfiles	PS51805	Extended PHD (ePHD) domain profile.	1	82	16.539585	IPR034732

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G04020.1	breast cancer associated RING 1. Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.
RefSeq	XP_021722203.1	BRCA1-associated RING domain protein 1-like [Chenopodium quinoa]
Swiss-Prot	F4I443	BRCA1-associated RING domain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BARD1 PE=1 SV=1
TrEMBL	A0A803M985	BRCA1-associated RING domain protein 1 OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg22309, jg35444, jg8668
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14361, gene_5282, gene_5286, gene_651
Amaranthaceae	Atriplex hortensis	2	Ah016382, Ah029205
Amaranthaceae	Beta vulgaris	2	BVRB_7g165610, BVRB_8g187360
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1166, Sbi_jg35422, Sbi_jg40566, Sbi_jg50593
Amaranthaceae	Salicornia europaea	2	Seu_jg2150, Seu_jg3548
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00018107, GOSA_00024437
Amaranthaceae	Suaeda glauca	7	Sgl45218, Sgl45235, Sgl50015, Sgl74208, Sgl74211, Sgl77638 ... Sgl77785
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005554, gene:ENSEOMG00000033335 ... gene:ENSEOMG00000034823, gene:ENSEOMG00000042372, gene:ENSEOMG00000046837
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0011830, CQ.Regalona.r1.7BG0013890 ... CQ.Regalona.r1.8AG0010010, CQ.Regalona.r1.8BG0011250
Anacardiaceae	Pistacia vera	2	pistato.v30015990, pistato.v30075910
Apiaceae	Apium graveolens	4	Ag2G01296, Ag2G01298, Ag7G00035, Ag8G00748
Arecaceae	Cocos nucifera	2	COCNU_06G020500, scaffold009984G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103703717, gene-LOC103716250
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.154.V1.1, AsparagusV1_07.1985.V1.1 ... AsparagusV1_07.3449.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G21678, Ftri17G00307, Ftri17G28730, Ftri6G27338 ... FtriNA20742
Brassicaceae	Arabidopsis thaliana	2	AT1G04020.1, AT4G21070.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006912m.g.v1.0, Thhalv10024364m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g02860.v2.2, Sp7g19160.v2.2
Brassicaceae	Brassica nigra	4	BniB02g001490.2N, BniB03g000680.2N, BniB03g022240.2N ... BniB05g015950.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1356
Casuarinaceae	Casuarina glauca	1	Cgl06G1420
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g04530
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate04g00810, gene.Thate04g16490, gene.Thate04g16500 ... gene.Thate06g19340, gene.Thate08g24340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-6366, nbisL1-mrna-9698, nbisL1-mrna-9699
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.1121, evm.TU.LG12.155
Plantaginaceae	Plantago ovata	2	Pov_00024587, Pov_00038530
Plumbaginaceae	Limonium bicolor	2	Lb4G24930, Lb4G26026
Poaceae	Echinochloa crus-galli	8	AH05.1787, AH05.1988, AH09.1535, BH05.1954, BH05.2129 ... BH09.1734, CH05.2021, CH05.2190
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0310980, gene-QOZ80_4BG0342190 ... gene-QOZ80_5AG0367210, gene-QOZ80_5AG0368970, gene-QOZ80_5BG0414820, gene-QOZ80_5BG0416560
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0070230.1, HORVU.MOREX.r3.1HG0078370.1 ... HORVU.MOREX.r3.2HG0118690.1, HORVU.MOREX.r3.2HG0181390.1
Poaceae	Lolium multiflorum	5	gene-QYE76_013937, gene-QYE76_013938, gene-QYE76_014832 ... gene-QYE76_047883, gene-QYE76_049606
Poaceae	Oryza coarctata	5	Oco07G010570, Oco08G010310, Oco09G012620, Oco10G012700 ... Oco10G013910
Poaceae	Oryza sativa	3	LOC_Os04g43300.1, LOC_Os05g40810.1, LOC_Os05g43610.1
Poaceae	Paspalum vaginatum	3	gene-BS78_06G157200, gene-BS78_09G180200 ... gene-BS78_09G198000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0302108, Pt_Chr0302132, Pt_Chr0504246, Pt_Chr0504250 ... Pt_Chr0504460, Pt_Chr0504522
Poaceae	Sporobolus alterniflorus	9	Chr01G017220, Chr12G019500, Chr18G012490, Chr18G013560 ... Chr22G004080, Chr22G005290, Chr23G008930, Chr25G010730, Chr26G010740
Poaceae	Thinopyrum elongatum	4	Tel1E01G493200, Tel1E01G536800, Tel2E01G283000 ... Tel2E01G660100
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG045340, gene_TRIDC1AG048940 ... gene_TRIDC1BG051210, gene_TRIDC1BG051250, gene_TRIDC1BG055610, gene_TRIDC2AG017320, gene_TRIDC2AG055460, gene_TRIDC2BG020890, gene_TRIDC2BG058230, gene_TRIDC4BG030250
Poaceae	Triticum aestivum	14	TraesCS1A02G304700.1, TraesCS1A02G329600.1 ... TraesCS1B02G315000.1, TraesCS1B02G315300.1, TraesCS1B02G343100.2, TraesCS1D02G304000.1, TraesCS1D02G304600.1, TraesCS1D02G331700.1, TraesCS2A02G139100.2, TraesCS2A02G384900.1, TraesCS2B02G163200.1, TraesCS2B02G401900.1, TraesCS2D02G142000.2, TraesCS2D02G381600.1
Poaceae	Zea mays	3	Zm00001eb077450_P001, Zm00001eb245990_P002 ... Zm00001eb292490_P001
Poaceae	Zoysia japonica	4	nbis-gene-14394, nbis-gene-14395, nbis-gene-25341 ... nbis-gene-5250
Poaceae	Zoysia macrostachya	3	Zma_g21605, Zma_g26893, Zma_g28465
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1329, evm.TU.LG01.545, evm.TU.LG03.917 ... evm.TU.LG04.1137, evm.TU.LG04.220, evm.TU.LG05.1678, evm.TU.LG12.816
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01130, gene.Posoc10g05060
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.858, evm.TU.Scaffold_5_RagTag.1128
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11597, nbisL1-mrna-25027
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4874, nbisL1-mrna-6143
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19222
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.396, evm.TU.utg000022l.63
Rhizophoraceae	Kandelia obovata	2	Maker00013168, Maker00016219
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-59, nbisL1-mrna-9896
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10290, nbisL1-mrna-19833
Salicaceae	Populus euphratica	2	populus_peu00932, populus_peu30745
Solanaceae	Lycium barbarum	3	gene-LOC132605718, gene-LOC132610669, gene-LOC132611460
Solanaceae	Solanum chilense	3	SOLCI000661100, SOLCI002722200, SOLCI004840000
Solanaceae	Solanum pennellii	5	gene-LOC107005400, gene-LOC107018841, gene-LOC107022026 ... gene-LOC107028944, gene-LOC107029828
Tamaricaceae	Reaumuria soongarica	2	STRG.253_chr01_-, gene_9697
Tamaricaceae	Tamarix chinensis	2	TC01G0588, TC06G1111
Zosteraceae	Zostera marina	3	Zosma01g38440.v3.1, Zosma03g23680.v3.1, Zosma05g29400.v3.1