Basic Information
Locus ID:
gene_14242
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 23148242 | 23154298 | - | gene_14242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 53,973.27 Da | 57.40 | 86.16 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 255 | 303 | 3.38597E-16 | - |
| Pfam | PF12906 | RING-variant domain | 255 | 302 | 2.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 306 | 7.65E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 240 | 310 | 3.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 254 | 303 | 9.6E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 247 | 309 | 20.047735 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 246 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010684110.2 | uncharacterized protein LOC104898704 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C8ZSE4 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology