Basic Information
Locus ID:
gene_14181
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 19434580 | 19455533 | - | gene_14181 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 167,110.73 Da | 54.53 | 95.61 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1183 | 1486 | 2.7E-60 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1131 | 1487 | 1.96E-71 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 485 | 1.57E-31 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 71 | 488 | 1.8E-41 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1082 | 1306 | 1.6E-37 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1420 | 1491 | 1.9E-12 | - |
| SMART | SM00119 | hect_3 | 1149 | 1499 | 8.7E-47 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1151 | 1486 | 46.337379 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 865 | - | - |
| Coils | Coil | Coil | 917 | 937 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021751622.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N3U7 | HECT-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology