HalophFGD

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Basic Information
Locus ID: gene_14055
Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544
Genome Assembly: Koichi Toyokura Assembly
Description: Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
Chromosome Start End Strand ID
Super-Scaffold_1_Chr_9 12933601 12934372 - gene_14055
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
4.06 21,436.39 Da 42.28 83.10 -0.51
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13639 Ring finger domain 138 165 7.3E-7 IPR001841
SUPERFAMILY SSF57850 RING/U-box 133 167 1.13E-8 -
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 9.8E-9 IPR013083
KEGG Pathway
KO Term:
K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])
Best hit
Source Best Hit ID Description E-value
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Aizoaceae Mesembryanthemum crystallinum 4 gene_14053, gene_14055, gene_25948, gene_26582
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