Basic Information
Locus ID:
gene_14054
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Contains the following InterPro domains Zinc finger, RING-type (InterPro IPR001841), Zinc finger, C3HC4 RING-type (InterPro IPR018957)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 12931629 | 12932250 | - | gene_14054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 19,712.19 Da | 27.93 | 98.44 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 174 | 4.04E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 178 | 1.8E-8 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14054 |
| Amaranthaceae | Atriplex hortensis | 8 | Ah002233, Ah009874, Ah009885, Ah014959, Ah014962, Ah014966 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g215960, BVRB_9g215970 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017607 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33425, Sgl38793 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011465, gene:ENSEOMG00000030076 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0016950, CQ.Regalona.r1.8BG0017900 |